Detailed information of SNP:
|
SNP ID:
sf0507245891(Gbrowse)
Chromosome: chr05 Position: 7245891 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 69.80% | 30.20% |
| All Indica | 798 | 69.30% | 30.70% |
| All Japonica | 496 | 71.98% | 28.02% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 374 | 86.36% | 13.64% |
| Indica II | 213 | 28.17% | 71.83% |
| Indica Intermediate | 211 | 80.57% | 19.43% |
| Temperate Japonica | 335 | 94.93% | 5.07% |
| Tropical Japonica | 94 | 11.70% | 88.30% |
| Japonica Intermediate | 67 | 41.79% | 58.21% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507245891 | C->T | LOC_Os05g12620(LOC_Os05g12620.1) | Non-Synonymous SNP |