Detailed information of SNP:
|
SNP ID:
sf0507253792(Gbrowse)
Chromosome: chr05 Position: 7253792 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 92.38% | 7.62% |
| All Indica | 799 | 93.62% | 6.38% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 67 | 31.34% | 68.66% |
| Indica I | 375 | 91.73% | 8.27% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507253792 | C->T | INTERGENIC | None |