Detailed information of SNP:
|
SNP ID:
sf0507254279(Gbrowse)
Chromosome: chr05 Position: 7254279 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 92.25% | 7.75% |
| All Indica | 799 | 93.62% | 6.38% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 31.34% | 68.66% |
| Indica I | 375 | 91.73% | 8.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507254279 | A->G | INTERGENIC | None |