Detailed information of SNP:
|
SNP ID:
sf0507267106(Gbrowse)
Chromosome: chr05 Position: 7267106 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 57.02% | 42.98% |
| All Indica | 798 | 33.08% | 66.92% |
| All Japonica | 496 | 98.99% | 1.01% |
| Aus | 67 | 17.91% | 82.09% |
| Indica I | 374 | 14.71% | 85.29% |
| Indica II | 213 | 72.77% | 27.23% |
| Indica Intermediate | 211 | 25.59% | 74.41% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507267106 | G->A | INTERGENIC | None |