Detailed information of SNP:
|
SNP ID:
sf0507287595(Gbrowse)
Chromosome: chr05 Position: 7287595 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1255 | 53.15% | 46.85% |
| All Indica | 642 | 34.74% | 65.26% |
| All Japonica | 494 | 72.06% | 27.94% |
| Aus | 65 | 83.08% | 16.92% |
| Indica I | 269 | 25.28% | 74.72% |
| Indica II | 200 | 25.00% | 75.00% |
| Indica Intermediate | 173 | 60.69% | 39.31% |
| Temperate Japonica | 335 | 94.33% | 5.67% |
| Tropical Japonica | 93 | 10.75% | 89.25% |
| Japonica Intermediate | 66 | 45.45% | 54.55% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507287595 | C->T | INTERGENIC | None |