Detailed information of SNP:
|
SNP ID:
sf0507293800(Gbrowse)
Chromosome: chr05 Position: 7293800 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 70.59% | 29.41% |
| All Indica | 798 | 69.05% | 30.95% |
| All Japonica | 497 | 72.03% | 27.97% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 374 | 86.10% | 13.90% |
| Indica II | 213 | 28.64% | 71.36% |
| Indica Intermediate | 211 | 79.62% | 20.38% |
| Temperate Japonica | 335 | 94.03% | 5.97% |
| Tropical Japonica | 94 | 11.70% | 88.30% |
| Japonica Intermediate | 68 | 47.06% | 52.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507293800 | C->T | INTERGENIC | None |