Detailed information of SNP:
|
SNP ID:
sf0507296674(Gbrowse)
Chromosome: chr05 Position: 7296674 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 58.35% | 41.65% |
| All Indica | 797 | 35.38% | 64.62% |
| All Japonica | 495 | 98.99% | 1.01% |
| Aus | 67 | 17.91% | 82.09% |
| Indica I | 373 | 19.30% | 80.70% |
| Indica II | 213 | 73.71% | 26.29% |
| Indica Intermediate | 211 | 25.12% | 74.88% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507296674 | C->T | INTERGENIC | None |