Detailed information of SNP:
|
SNP ID:
sf0507301138(Gbrowse)
Chromosome: chr05 Position: 7301138 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1406 | 96.02% | 3.98% |
| All Indica | 786 | 93.00% | 7.00% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 366 | 98.63% | 1.37% |
| Indica II | 212 | 95.28% | 4.72% |
| Indica Intermediate | 208 | 80.77% | 19.23% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507301138 | C->G | INTERGENIC | None |