Detailed information of SNP:
|
SNP ID:
sf0507312968(Gbrowse)
Chromosome: chr05 Position: 7312968 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 56.11% | 43.89% |
| All Indica | 797 | 31.62% | 68.38% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 375 | 14.13% | 85.87% |
| Indica II | 212 | 73.58% | 26.42% |
| Indica Intermediate | 210 | 20.48% | 79.52% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507312968 | G->A | INTERGENIC | None |