Detailed information of SNP:
|
SNP ID:
sf0507336912(Gbrowse)
Chromosome: chr05 Position: 7336912 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 51.37% | 48.63% |
| All Indica | 799 | 80.73% | 19.27% |
| All Japonica | 497 | 1.41% | 98.59% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 94.40% | 5.60% |
| Indica II | 213 | 52.58% | 47.42% |
| Indica Intermediate | 211 | 84.83% | 15.17% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507336912 | C->T | INTERGENIC | None |