Detailed information of SNP:
|
SNP ID:
sf0507344999(Gbrowse)
Chromosome: chr05 Position: 7344999 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 96.38% | 3.62% |
| All Indica | 788 | 94.04% | 5.96% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 366 | 96.45% | 3.55% |
| Indica II | 213 | 90.61% | 9.39% |
| Indica Intermediate | 209 | 93.30% | 6.70% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507344999 | G->A | INTERGENIC | None |