Detailed information of SNP:
|
SNP ID:
sf0507350857(Gbrowse)
Chromosome: chr05 Position: 7350857 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 76.32% | 23.68% |
| All Indica | 799 | 86.48% | 13.52% |
| All Japonica | 497 | 59.36% | 40.64% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 58.22% | 41.78% |
| Indica Intermediate | 211 | 92.42% | 7.58% |
| Temperate Japonica | 335 | 78.51% | 21.49% |
| Tropical Japonica | 94 | 12.77% | 87.23% |
| Japonica Intermediate | 68 | 29.41% | 70.59% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507350857 | G->A | LOC_Os05g12804(LOC_Os05g12804.1) | Non-Synonymous SNP |