Detailed information of SNP:
|
SNP ID:
sf0507360641(Gbrowse)
Chromosome: chr05 Position: 7360641 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 77.23% | 22.77% |
| All Indica | 795 | 85.91% | 14.09% |
| All Japonica | 497 | 62.58% | 37.42% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 371 | 98.65% | 1.35% |
| Indica II | 213 | 56.34% | 43.66% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 335 | 78.21% | 21.79% |
| Tropical Japonica | 94 | 30.85% | 69.15% |
| Japonica Intermediate | 68 | 29.41% | 70.59% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507360641 | A->G | INTERGENIC | None |