Detailed information of SNP:
|
SNP ID:
sf0507368844(Gbrowse)
Chromosome: chr05 Position: 7368844 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 50.99% | 49.01% |
| All Indica | 799 | 18.15% | 81.85% |
| All Japonica | 497 | 95.37% | 4.63% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 3.47% | 96.53% |
| Indica II | 213 | 43.66% | 56.34% |
| Indica Intermediate | 211 | 18.48% | 81.52% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 78.72% | 21.28% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507368844 | C->A | LOC_Os05g13300(LOC_Os05g13300.1) | INTRON |