Detailed information of SNP:
|
SNP ID:
sf0507386865(Gbrowse)
Chromosome: chr05 Position: 7386865 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 70.97% | 29.03% |
| All Indica | 798 | 86.72% | 13.28% |
| All Japonica | 496 | 43.55% | 56.45% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 57.55% | 42.45% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 334 | 54.19% | 45.81% |
| Tropical Japonica | 94 | 24.47% | 75.53% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507386865 | A->C | INTERGENIC | None |