Detailed information of SNP:
|
SNP ID:
sf0507443043(Gbrowse)
Chromosome: chr05 Position: 7443043 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1396 | 98.35% | 1.65% |
| All Indica | 796 | 99.87% | 0.13% |
| All Japonica | 478 | 95.40% | 4.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 210 | 99.52% | 0.48% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 325 | 94.15% | 5.85% |
| Tropical Japonica | 90 | 100.00% | 0.00% |
| Japonica Intermediate | 63 | 95.24% | 4.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507443043 | G->A | LOC_Os05g13400(LOC_Os05g13400.1) | INTRON |