Detailed information of SNP:
|
SNP ID:
sf0507517916(Gbrowse)
Chromosome: chr05 Position: 7517916 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1348 | 98.29% | 1.71% |
| All Indica | 793 | 100.00% | 0.00% |
| All Japonica | 436 | 94.72% | 5.28% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 207 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 295 | 93.56% | 6.44% |
| Tropical Japonica | 82 | 100.00% | 0.00% |
| Japonica Intermediate | 59 | 93.22% | 6.78% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507517916 | G->A | INTERGENIC | None |