Detailed information of SNP:
|
SNP ID:
sf0507527525(Gbrowse)
Chromosome: chr05 Position: 7527525 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 54.76% | 45.24% |
| All Indica | 798 | 84.96% | 15.04% |
| All Japonica | 497 | 4.43% | 95.57% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 212 | 52.83% | 47.17% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 0.60% | 99.40% |
| Tropical Japonica | 94 | 19.15% | 80.85% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507527525 | G->C | INTERGENIC | None |