Detailed information of SNP:
|
SNP ID:
sf0507535562(Gbrowse)
Chromosome: chr05 Position: 7535562 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1351 | 93.93% | 6.07% |
| All Indica | 795 | 99.87% | 0.13% |
| All Japonica | 436 | 81.65% | 18.35% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 210 | 99.52% | 0.48% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 281 | 76.16% | 23.84% |
| Tropical Japonica | 89 | 95.51% | 4.49% |
| Japonica Intermediate | 66 | 86.36% | 13.64% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 97.44% | 2.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507535562 | T->C | INTERGENIC | None |