Detailed information of SNP:



SNP ID: sf0507563585(Gbrowse)

Chromosome: chr05

Position: 7563585
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1419 94.71% 5.29%
All Indica799 97.75% 2.25%
All Japonica497 100.00% 0.00%
Aus67 29.85% 70.15%
Indica I375 99.47% 0.53%
Indica II213 97.65% 2.35%
Indica Intermediate211 94.79% 5.21%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 92.86% 7.14%
Intermediate42 78.57% 21.43%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0507563585 C->T INTERGENIC None