Detailed information of SNP:
|
SNP ID:
sf0507579032(Gbrowse)
Chromosome: chr05 Position: 7579032 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 90.27% | 9.73% |
| All Indica | 799 | 95.74% | 4.26% |
| All Japonica | 497 | 94.57% | 5.43% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 79.79% | 20.21% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507579032 | A->G | INTERGENIC | None |