Detailed information of SNP:
|
SNP ID:
sf0507588191(Gbrowse)
Chromosome: chr05 Position: 7588191 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 91.16% | 8.84% |
| All Indica | 794 | 94.46% | 5.54% |
| All Japonica | 497 | 96.38% | 3.62% |
| Aus | 67 | 23.88% | 76.12% |
| Indica I | 374 | 96.79% | 3.21% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 207 | 88.89% | 11.11% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507588191 | A->G | INTERGENIC | None |