Detailed information of SNP:
|
SNP ID:
sf0507602176(Gbrowse)
Chromosome: chr05 Position: 7602176 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1390 | 54.96% | 45.04% |
| All Indica | 770 | 23.51% | 76.49% |
| All Japonica | 497 | 95.98% | 4.02% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 363 | 17.63% | 82.37% |
| Indica II | 206 | 35.92% | 64.08% |
| Indica Intermediate | 201 | 21.39% | 78.61% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507602176 | A->C | INTERGENIC | None |