Detailed information of SNP:
|
SNP ID:
sf0507614838(Gbrowse)
Chromosome: chr05 Position: 7614838 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1391 | 52.70% | 47.30% |
| All Indica | 784 | 24.11% | 75.89% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 55 | 25.45% | 74.55% |
| Indica I | 367 | 20.44% | 79.56% |
| Indica II | 210 | 34.76% | 65.24% |
| Indica Intermediate | 207 | 19.81% | 80.19% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507614838 | A->C | LOC_Os05g13740(LOC_Os05g13740.1) | Non-Synonymous SNP |