Detailed information of SNP:
|
SNP ID:
sf0507615033(Gbrowse)
Chromosome: chr05 Position: 7615033 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1390 | 93.60% | 6.40% |
| All Indica | 771 | 89.11% | 10.89% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 358 | 87.15% | 12.85% |
| Indica II | 209 | 92.34% | 7.66% |
| Indica Intermediate | 204 | 89.22% | 10.78% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507615033 | G->A | LOC_Os05g13740(LOC_Os05g13740.1) | Non-Synonymous SNP |