Detailed information of SNP:
|
SNP ID:
sf0507616802(Gbrowse)
Chromosome: chr05 Position: 7616802 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1372 | 56.05% | 43.95% |
| All Indica | 755 | 23.31% | 76.69% |
| All Japonica | 496 | 98.39% | 1.61% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 355 | 14.93% | 85.07% |
| Indica II | 201 | 32.84% | 67.16% |
| Indica Intermediate | 199 | 28.64% | 71.36% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507616802 | A->G | INTERGENIC | None |