Detailed information of SNP:
|
SNP ID:
sf0507626220(Gbrowse)
Chromosome: chr05 Position: 7626220 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 57.74% | 42.26% |
| All Indica | 797 | 89.59% | 10.41% |
| All Japonica | 495 | 3.84% | 96.16% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 212 | 75.94% | 24.06% |
| Indica Intermediate | 210 | 91.90% | 8.10% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 92 | 17.39% | 82.61% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507626220 | A->G | LOC_Os05g13760(LOC_Os05g13760.1) | INTRON |