Detailed information of SNP:
|
SNP ID:
sf0507628877(Gbrowse)
Chromosome: chr05 Position: 7628877 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 55.99% | 44.01% |
| All Indica | 798 | 88.60% | 11.40% |
| All Japonica | 497 | 4.02% | 95.98% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 212 | 77.83% | 22.17% |
| Indica Intermediate | 211 | 83.41% | 16.59% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 18.09% | 81.91% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507628877 | G->A | INTERGENIC | None |