Detailed information of SNP:
|
SNP ID:
sf0507651554(Gbrowse)
Chromosome: chr05 Position: 7651554 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 58.09% | 41.91% |
| All Indica | 798 | 91.48% | 8.52% |
| All Japonica | 497 | 5.23% | 94.77% |
| Aus | 66 | 71.21% | 28.79% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 77.93% | 22.07% |
| Indica Intermediate | 210 | 93.33% | 6.67% |
| Temperate Japonica | 335 | 1.79% | 98.21% |
| Tropical Japonica | 94 | 19.15% | 80.85% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 45.00% | 55.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507651554 | A->G | LOC_Os05g13800(LOC_Os05g13800.1) | INTRON |