Detailed information of SNP:
|
SNP ID:
sf0507685697(Gbrowse)
Chromosome: chr05 Position: 7685697 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1377 | 51.78% | 48.22% |
| All Indica | 788 | 84.26% | 15.74% |
| All Japonica | 467 | 5.35% | 94.65% |
| Aus | 66 | 16.67% | 83.33% |
| Indica I | 372 | 89.78% | 10.22% |
| Indica II | 206 | 76.21% | 23.79% |
| Indica Intermediate | 210 | 82.38% | 17.62% |
| Temperate Japonica | 315 | 1.59% | 98.41% |
| Tropical Japonica | 88 | 20.45% | 79.55% |
| Japonica Intermediate | 64 | 3.12% | 96.88% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 30.95% | 69.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507685697 | A->G | LOC_Os05g13830(LOC_Os05g13830.1) | Non-Synonymous SNP |