Detailed information of SNP:
|
SNP ID:
sf0507693976(Gbrowse)
Chromosome: chr05 Position: 7693976 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 93.63% | 6.37% |
| All Indica | 797 | 93.98% | 6.02% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 63 | 46.03% | 53.97% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 212 | 95.75% | 4.25% |
| Indica Intermediate | 210 | 82.86% | 17.14% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507693976 | T->A | INTERGENIC | None |