Detailed information of SNP:
|
SNP ID:
sf0507713364(Gbrowse)
Chromosome: chr05 Position: 7713364 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 95.74% | 4.26% |
| All Indica | 792 | 97.98% | 2.02% |
| All Japonica | 496 | 98.59% | 1.41% |
| Aus | 65 | 53.85% | 46.15% |
| Indica I | 373 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 206 | 92.72% | 7.28% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 93.55% | 6.45% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507713364 | C->T | LOC_Os05g13880(LOC_Os05g13880.1) | Non-Synonymous SNP |