Detailed information of SNP:
|
SNP ID:
sf0507714414(Gbrowse)
Chromosome: chr05 Position: 7714414 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1284 | 91.20% | 8.80% |
| All Indica | 667 | 83.36% | 16.64% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 305 | 72.79% | 27.21% |
| Indica II | 182 | 89.56% | 10.44% |
| Indica Intermediate | 180 | 95.00% | 5.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507714414 | C->T | INTERGENIC | None |