Detailed information of SNP:
|
SNP ID:
sf0507782022(Gbrowse)
Chromosome: chr05 Position: 7782022 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 60.45% | 39.55% |
| All Indica | 796 | 40.20% | 59.80% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 375 | 59.73% | 40.27% |
| Indica II | 212 | 25.47% | 74.53% |
| Indica Intermediate | 209 | 20.10% | 79.90% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507782022 | T->C | INTERGENIC | None |