Detailed information of SNP:
|
SNP ID:
sf0507837620(Gbrowse)
Chromosome: chr05 Position: 7837620 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1376 | 59.88% | 40.12% |
| All Indica | 759 | 29.12% | 70.88% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 65 | 84.62% | 15.38% |
| Indica I | 359 | 16.99% | 83.01% |
| Indica II | 203 | 50.74% | 49.26% |
| Indica Intermediate | 197 | 28.93% | 71.07% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507837620 | G->A | INTERGENIC | None |