Detailed information of SNP:
|
SNP ID:
sf0507847177(Gbrowse)
Chromosome: chr05 Position: 7847177 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 57.97% | 42.03% |
| All Indica | 798 | 89.10% | 10.90% |
| All Japonica | 497 | 4.83% | 95.17% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 212 | 70.75% | 29.25% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 335 | 5.67% | 94.33% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507847177 | A->G | INTERGENIC | None |