Detailed information of SNP:
|
SNP ID:
sf0507863121(Gbrowse)
Chromosome: chr05 Position: 7863121 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 53.72% | 46.28% |
| All Indica | 794 | 87.41% | 12.59% |
| All Japonica | 496 | 1.01% | 98.99% |
| Aus | 67 | 67.16% | 32.84% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 66.20% | 33.80% |
| Indica Intermediate | 206 | 89.32% | 10.68% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 93 | 3.23% | 96.77% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 33.33% | 66.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507863121 | T->C | LOC_Os05g14070(LOC_Os05g14070.1) | Non-Synonymous SNP |