Detailed information of SNP:
|
SNP ID:
sf0507865955(Gbrowse)
Chromosome: chr05 Position: 7865955 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 51.77% | 48.23% |
| All Indica | 793 | 83.98% | 16.02% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 65.67% | 34.33% |
| Indica I | 374 | 94.65% | 5.35% |
| Indica II | 213 | 64.79% | 35.21% |
| Indica Intermediate | 206 | 84.47% | 15.53% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 36.59% | 63.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507865955 | C->T | INTERGENIC | None |