Detailed information of SNP:
|
SNP ID:
sf0507885357(Gbrowse)
Chromosome: chr05 Position: 7885357 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1402 | 53.07% | 46.93% |
| All Indica | 783 | 18.90% | 81.10% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 365 | 5.75% | 94.25% |
| Indica II | 210 | 37.62% | 62.38% |
| Indica Intermediate | 208 | 23.08% | 76.92% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507885357 | C->T | LOC_Os05g14110(LOC_Os05g14110.1) | Synonymous |