Detailed information of SNP:
|
SNP ID:
sf0507898699(Gbrowse)
Chromosome: chr05 Position: 7898699 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 51.84% | 48.16% |
| All Indica | 795 | 17.23% | 82.77% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 375 | 7.73% | 92.27% |
| Indica II | 211 | 30.33% | 69.67% |
| Indica Intermediate | 209 | 21.05% | 78.95% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507898699 | C->T | INTERGENIC | None |