Detailed information of SNP:
|
SNP ID:
sf0507921432(Gbrowse)
Chromosome: chr05 Position: 7921432 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1398 | 97.71% | 2.29% |
| All Indica | 782 | 96.68% | 3.32% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 64 | 96.88% | 3.12% |
| Indica I | 371 | 97.04% | 2.96% |
| Indica II | 210 | 96.19% | 3.81% |
| Indica Intermediate | 201 | 96.52% | 3.48% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507921432 | C->T | INTERGENIC | None |