Detailed information of SNP:
|
SNP ID:
sf0507940227(Gbrowse)
Chromosome: chr05 Position: 7940227 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1381 | 65.60% | 34.40% |
| All Indica | 798 | 96.99% | 3.01% |
| All Japonica | 496 | 15.32% | 84.68% |
| Aus | 37 | 89.19% | 10.81% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 210 | 95.71% | 4.29% |
| Temperate Japonica | 335 | 21.79% | 78.21% |
| Tropical Japonica | 93 | 2.15% | 97.85% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 13 | 0.00% | 100.00% |
| Intermediate | 37 | 62.16% | 37.84% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507940227 | T->G | INTERGENIC | None |