Detailed information of SNP:
|
SNP ID:
sf0507948537(Gbrowse)
Chromosome: chr05 Position: 7948537 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 55.11% | 44.89% |
| All Indica | 799 | 86.73% | 13.27% |
| All Japonica | 497 | 11.67% | 88.33% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 375 | 94.67% | 5.33% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 64.93% | 35.07% |
| Temperate Japonica | 335 | 16.42% | 83.58% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0507948537 | C->T | INTERGENIC | None |