Detailed information of SNP:
|
SNP ID:
sf0508006898(Gbrowse)
Chromosome: chr05 Position: 8006898 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 91.53% | 8.47% |
| All Indica | 798 | 92.36% | 7.64% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 67 | 29.85% | 70.15% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 76.06% | 23.94% |
| Indica Intermediate | 210 | 95.24% | 4.76% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0508006898 | G->A | LOC_Os05g14260(LOC_Os05g14260.1) | INTRON |