Detailed information of SNP:



SNP ID: sf0508113014(Gbrowse)

Chromosome: chr05

Position: 8113014
Major allele: G

Minor allele: A

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1381 91.24% 8.76%
All Indica761 84.23% 15.77%
All Japonica497 100.00% 0.00%
Aus67 100.00% 0.00%
Indica I365 92.05% 7.95%
Indica II208 75.48% 24.52%
Indica Intermediate188 78.72% 21.28%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 97.62% 2.38%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0508113014 G->A LOC_Os05g14400(LOC_Os05g14400.1) Synonymous