Detailed information of SNP:
|
SNP ID:
sf0508113014(Gbrowse)
Chromosome: chr05 Position: 8113014 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1381 | 91.24% | 8.76% |
| All Indica | 761 | 84.23% | 15.77% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 365 | 92.05% | 7.95% |
| Indica II | 208 | 75.48% | 24.52% |
| Indica Intermediate | 188 | 78.72% | 21.28% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0508113014 | G->A | LOC_Os05g14400(LOC_Os05g14400.1) | Synonymous |