Detailed information of SNP:
|
SNP ID:
sf0508125037(Gbrowse)
Chromosome: chr05 Position: 8125037 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1211 | 85.14% | 14.86% |
| All Indica | 601 | 71.38% | 28.62% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 64 | 93.75% | 6.25% |
| Indica I | 292 | 72.95% | 27.05% |
| Indica II | 167 | 73.65% | 26.35% |
| Indica Intermediate | 142 | 65.49% | 34.51% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 36 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0508125037 | T->C | LOC_Os05g14410(LOC_Os05g14410.1) | Non-Synonymous SNP |