Detailed information of SNP:
|
SNP ID:
sf0508129151(Gbrowse)
Chromosome: chr05 Position: 8129151 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 54.26% | 45.74% |
| All Indica | 799 | 27.91% | 72.09% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 375 | 30.40% | 69.60% |
| Indica II | 213 | 36.62% | 63.38% |
| Indica Intermediate | 211 | 14.69% | 85.31% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0508129151 | G->C | LOC_Os05g14420(LOC_Os05g14420.1) | Non-Synonymous SNP |