Detailed information of SNP:
|
SNP ID:
sf0508295983(Gbrowse)
Chromosome: chr05 Position: 8295983 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1390 | 78.13% | 21.87% |
| All Indica | 771 | 61.61% | 38.39% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 358 | 56.98% | 43.02% |
| Indica II | 208 | 68.27% | 31.73% |
| Indica Intermediate | 205 | 62.93% | 37.07% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0508295983 | C->T | LOC_Os05g14560(LOC_Os05g14560.1) | INTRON |