Detailed information of SNP:
|
SNP ID:
sf0508324226(Gbrowse)
Chromosome: chr05 Position: 8324226 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1378 | 73.00% | 27.00% |
| All Indica | 761 | 53.48% | 46.52% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 65 | 83.08% | 16.92% |
| Indica I | 355 | 56.90% | 43.10% |
| Indica II | 207 | 59.90% | 40.10% |
| Indica Intermediate | 199 | 40.70% | 59.30% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0508324226 | T->A | INTERGENIC | None |