Detailed information of SNP:
|
SNP ID:
sf0508328786(Gbrowse)
Chromosome: chr05 Position: 8328786 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1356 | 76.03% | 23.97% |
| All Indica | 739 | 58.05% | 41.95% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 345 | 53.62% | 46.38% |
| Indica II | 204 | 69.12% | 30.88% |
| Indica Intermediate | 190 | 54.21% | 45.79% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0508328786 | G->T | LOC_Os05g14620(LOC_Os05g14620.1) | Synonymous |